Skip to main content
Log in

An Association Study of Gamma-Aminobutyric Acid Type A Receptor Variants and Susceptibility to Autism Spectrum Disorders

  • Original Paper
  • Published:
Journal of Autism and Developmental Disorders Aims and scope Submit manuscript

Abstract

In this pilot study, we aim to identify the role of few genetic variants of GABA-receptor type A subunits GABRB3 (rs4906902, rs7171660), GABRG3 (rs208129, rs140679), GABRA5 (rs 140681) in the aetiology of autism spectrum disorders in a population of West Bengal. 192 ASD probands, their parents and 184 ethnically-matched healthy controls were recruited for the study. The rs4906902G and the rs140679T conferred significant risk towards ASD. rs7171660 and rs140679 had transmission bias in the family. Neither alleles of rs 208129 and rs 140681 showed significant over-representation in either groups. All these variants were associated with at least one deficit in ASD-associated phenotypes like ‘relating to people’, ‘Imitation’, ‘emotional response’, ‘body use’, ‘taste, smell, touch response’ and ‘activity levels’.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1

Similar content being viewed by others

References

  • American Psychiatric Association. (2000). Diagnostic and statistical manual of mental disorders (4th ed.). Washington, DC: American Psychiatric Association.

    Google Scholar 

  • American Psychiatric Association. (2013). Diagnostic and statistical manual of mental disorders (5th ed.). Washington, DC: American Psychiatric Association.

    Google Scholar 

  • Buxbaum, J. D., Silverman, J. M., Smith, C. J., Greenberg, D. A., Kilifarski, M., Reichert, J., Jr., et al. (2002). Association between a GABRB3 polymorphism and autism. Molecular Psychiatry, 7(2), 311–316.

    Article  Google Scholar 

  • Centers for Disease control and Prevention. (2018). Prevalence of Autism Spectrum Disorder Among Children Aged 8 Years—Autism and Developmental Disabilities Monitoring Network, 11 Sites, USA.

  • Chaste, P., & Leboyer, M. (2012). Autism risk factors: Genes, environment, and gene-environment interactions. Dialogues in Clinical Neuroscience, 14(3), 281–292.

    Article  Google Scholar 

  • Chen, C.-H., Huang, C.-C., Cheng, M.-C., Chiu, Y.-N., Tsai, W.-C., Wu, Y.-Y., et al. (2014). Genetic analysis of GABRB3 as a candidate gene of autism spectrum disorders. Molecular Autism. https://doi.org/10.1186/2040-2392-5-36.

    Article  PubMed  PubMed Central  Google Scholar 

  • Chlebowski, C., Green, J. A., Barton, M. L., & Fein, D. (2010). Using the childhood autism rating scale to diagnose autism spectrum disorders. Journal of Autism and Developmental Disorders, 40(7), 787–799.

    Article  Google Scholar 

  • Cook, E. H., Courchesne, R. Y., Cox, N. J., Lord, C., Gonen, D., Guter, S. J., et al. (1998). Linkage-disequilibrium mapping of autistic disorder, with 15q11-13 Markers. The American Journal of Human Genetics, 62(5), 1077–1083.

    Article  Google Scholar 

  • Dudbridge, F. (2008). Likelihood-based association analysis for nuclear families and unrelated subjects with missing genotype data. Human Heredity, 66(2), 87–98.

    Article  Google Scholar 

  • Eshraghi, A. A., Liu, G., Kay, S.-I.S., Eshraghi, R. S., Mittal, J., Moshiree, B., & Mittal, R. (2018). Epigenetics and autism spectrum disorder: Is there a correlation? Frontiers in Cellular Neuroscience. https://doi.org/10.3389/fncel.2018.00078.

    Article  PubMed  PubMed Central  Google Scholar 

  • Hahn, L. W., Ritchie, M. D., & Moore, J. H. (2003). Multifactor dimensionality reduction software for detecting gene-gene and gene-environment interactions. Bioinformatics, 19(3), 376–382.

    Article  Google Scholar 

  • Hicks, S. D., & Middleton, F. A. (2016). A comparative review of microrna expression patterns in autism spectrum disorder. Frontiers in Psychiatry. https://doi.org/10.3389/fpsyt.2016.00176.

    Article  PubMed  PubMed Central  Google Scholar 

  • Hogart, A., Nagarajan, R. P., Patzel, K. A., Yasui, D. H., & LaSalle, J. M. (2007). 15q11–13 GABAA receptor genes are normally biallelically expressed in brain yet are subject to epigenetic dysregulation in autism-spectrum disorders. Human Molecular Genetics, 16(6), 691–703. https://doi.org/10.1093/hmg/ddm014.

    Article  PubMed  Google Scholar 

  • Kim, S. A., Kim, J. H., Park, M., Cho, I. H., & Yoo, H. J. (2006). Association of GABRB3 polymorphisms with autism spectrum disorders in Korean Trios. Neuropsychobiology, 54(3), 160–165.

    Article  Google Scholar 

  • Kramer, J. R., Chan, G., Dick, D. M., Kuperman, S., Bucholz, K. K., Edenberg, H. J., & Bierut, L. J. (2008). Multiple-domain predictors of problematic alcohol use in young adulthood. Journal of Studies on Alcohol and Drugs, 69(5), 649–659. https://doi.org/10.15288/jsad.2008.69.649.

    Article  PubMed  PubMed Central  Google Scholar 

  • Li, Y.-J., Ou, J.-J., Li, Y.-M., & Xiang, D.-X. (2017). Dietary supplement for core symptoms of autism spectrum disorder: Where are we now and where should we go? Frontiers in Psychiatry. https://doi.org/10.3389/fpsyt.2017.00155.

    Article  PubMed  PubMed Central  Google Scholar 

  • Lu, G. B., Ou, P., Xu, L. P., Huang, H. L., Cheng, L., Yang, S. W., et al. (2012). Relationship between gene polymorphism of GABAA receptors gene and childhood autism. Zhonghua Yu Fang Yi Xue Za Zhi Chinese Journal of Preventive Medicine, 46(5), 460–464.

    PubMed  Google Scholar 

  • Ma, D. Q., Whitehead, P. L., Menold, M. M., Martin, E. R., Ashley-Koch, A. E., Mei, H., & Pericak-Vance, M. A. (2005). Identification of significant association and gene-gene interaction of GABA receptor subunit genes in autism. The American Journal of Human Genetics, 77(3), 377–388. https://doi.org/10.1086/433195.

    Article  PubMed  Google Scholar 

  • Mahdavi, M., Kheirollahi, M., Riahi, R., Khorvash, F., Khorrami, M., & Mirsafaie, M. (2018). Meta-analysis of the association between GABA receptor polymorphisms and autism spectrum disorder (ASD). Journal of Molecular Neuroscience, 65(1), 1–9. https://doi.org/10.1007/s12031-018-1073-7.

    Article  PubMed  Google Scholar 

  • Maniatis, T., Fritsch, E. F., & Sambrook, J. (1982). Molecular cloning: A laboratory manual. Cold Spring Harbor Laboratory: Cold Spring Harbor.

    Google Scholar 

  • Mccormick, D. A. (1989). GABA as an inhibitory neurotransmitter in human cerebral cortex. Journal of Neurophysiology, 62(5), 1018–1027.

    Article  Google Scholar 

  • Modabbernia, A., Velthorst, E., & Reichenberg, A. (2017). Environmental risk factors for autism: an evidence-based review of systematic reviews and meta-analyses. Molecular Autism. https://doi.org/10.1186/s13229-017-0121-4.

    Article  PubMed  PubMed Central  Google Scholar 

  • Noroozi, R., Mohammad, T., Ghafouri-Fard, S., Bidel, Z., Omrani, M. D., & Moghaddam, A. S. (2018a). Meta-analysis of GABRB3 gene polymorphisms and susceptibility to autism spectrum disorder. Journal of Molecular Neuroscience, 65(4), 432–437. https://doi.org/10.1007/s12031-018-1114-2.

    Article  PubMed  Google Scholar 

  • Noroozi, R., Taheri, M., Movafagh, A., Ghafouri-Fard, S., Sayad, A., Mirfakhraie, R., et al. (2018b). Association analysis of the GABRB3 promoter variant and susceptibility to autism spectrum disorder. Basal Ganglia, 11, 4–7. https://doi.org/10.1016/j.baga.2017.11.002.

    Article  Google Scholar 

  • Poovathinal, S. A., Anitha, A., Thomas, R., Kaniamattam, M., Melempatt, N., Anilkumar, A., & Meena, M. (2016). Prevalence of autism spectrum disorders in a semiurban community in south India. Annals of Epidemiology, 26(9), 663–665.

    Article  Google Scholar 

  • Rodriguez, S., Gaunt, T. R., & Day, I. N. M. (2009). Hardy-Weinberg equilibrium testing of biological ascertainment for Mendelian randomization studies. American Journal of Epidemiology, 169(4), 505–514.

    Article  Google Scholar 

  • Rudra, A., Belmonte, M. K., Soni, P. K., Banerjee, S., Mukerji, S., & Chakrabarti, B. (2017). Prevalence of autism spectrum disorder and autistic symptoms in a school-based cohort of children in Kolkata, India. Autism Research, 10(10), 1597–1605.

    Article  Google Scholar 

  • Schopler, E., Reichler, R., & Rochen Renner, B. (1988). The childhood autism rating scale. Los Angeles, CA: Western Psychological Services.

    Google Scholar 

  • Sutcliffe, J. S., Nurmi, E. L., & Lombroso, P. J. (2003). Genetics of childhood disorders: XLVII Autism, Part 6: Duplication and inherited susceptibility of chromosome 15q11-q13 Genes in Autism. Journal of the American Academy of Child & Adolescent Psychiatry, 42(2), 253–256.

    Article  Google Scholar 

  • Wang, L., Li, J., Shuang, M., Lu, T., Wang, Z., Zhang, T., et al. (2018). Association study and mutation sequencing of genes on chromosome 15q11-q13 identified GABRG3 as a susceptibility gene for autism in Chinese Han population. Translational Psychiatry, 8(1), 152–164.

    Article  Google Scholar 

  • Wu, C., & Sun, D. (2014). GABA receptors in brain development, function, and injury. Metabolic Brain Disease, 30(2), 367–379.

    Article  Google Scholar 

  • Yang, S., Guo, X., Dong, X., Han, Y., Gao, L., Su, Y., et al. (2017). GABAA receptor subunit gene polymorphisms predict symptom-based and developmental deficits in Chinese Han children and adolescents with autistic spectrum disorders. Scientific Reports. https://doi.org/10.1038/s41598-017-03666-0.

    Article  PubMed  PubMed Central  Google Scholar 

Download references

Acknowledgments

The study was funded by Manovikas Kendra, Kolkata-700107 [Grant No. 2019].

Author information

Authors and Affiliations

Authors

Contributions

NB coneptualised the work, designed the experiments, did a part of bench work, data analyses and interpretation, manuscript preparation. PA did the bench work mostly, data anayses, manuscript preperation. SS recruitment of study participants, manuscript preparation. All the authors read and approved the final version of the manuscript, tables, figures and supplementary contents submitted.

Corresponding author

Correspondence to Nilanjana Banerjee.

Ethics declarations

Conflict of interest

The authors declare no potential conflict of interest among them.

Additional information

Publisher's Note

Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

Supplementary Information

Below is the link to the Supplementary Information.

Supplementary Information 1 (DOC 740 kb)

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Adak, P., Sinha, S. & Banerjee, N. An Association Study of Gamma-Aminobutyric Acid Type A Receptor Variants and Susceptibility to Autism Spectrum Disorders. J Autism Dev Disord 51, 4043–4053 (2021). https://doi.org/10.1007/s10803-020-04865-x

Download citation

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s10803-020-04865-x

Keywords

Navigation