Founder mutations in the Netherlands: familial idiopathic ventricular fibrillation and DPP6

Three separate presentations to our cardiogenetics outpatient clinic finally resulted in the recognition of their familial connection and ultimately initiated a successful gene identification study to the culprit genetic abnormality.

A 44-year-old woman with an unremarkable medical history visited our outpatient clinic because of the SCD of her younger brother and her younger sister. One day, at the age of 31 years, her previously healthy brother was unexpectedly found dead in bed, and post-mortem evaluation did not reveal a cause of death. Several years later, her sister was found dead in bed at the same age as her deceased brother, and also, she had previously been considered healthy. Notably, this sister consulted a cardiologist because of palpitations 1 month before her death. On cardiac examination, she had one non-sustained ventricular tachycardia on 24-h Holter monitoring, but her ECG, echocardiography and exercise test were normal. Her ECG is shown in Fig. 1a. The family history further revealed that an uncle died unexpectedly at the age of 48 years late in the evening while he was out to inspect his cattle, and a great grandfather also died suddenly at a young age. Because of this impressive family history, the 44-year-old woman underwent a cardiac examination, which was unremarkable. Her ECG is shown in Fig. 1b. Because no abnormalities were found, it was discussed that prophylactic treatment was not readily indicated, but her family members were asked to visit a cardiologist in a search for an inheritable arrhythmia syndrome. A few months later, while further cardiac examinations of her two remaining brothers were carried out, she suffered from VF while drinking coffee in the morning. Fortunately, she was successfully resuscitated. Subsequently, an implantable cardioverter-defibrillator (ICD) was implanted, which to date has not discharged. However, only a few months after her resuscitation, her nephew (her deceased brother’s son) was also resuscitated from VF at the age of 16 years while climbing stairs. After an unremarkable complete cardiac examination, he too had an ICD implanted, and he has received appropriate discharges on several VF recurrences in the past years.

The 69-year-old father of a family contacted our outpatient clinic because of the SCD of two of his sons. The youngest son died in his sleep at the age of 32, and the oldest son died at the age of 37 years while sitting in a car (in the passenger seat). Both were previously considered healthy. Post-mortem evaluations did not reveal the cause of these young deaths. Further family history revealed that the father had three uncles who had also died unexpectedly in bed. They were 41, 38 and 28 years old, respectively. As the father is the link between his sons and his uncles, he was considered to have transmitted the SCD-related gene defect although he had been asymptomatic his whole life. Complete cardiac evaluation of the father and his eight remaining children (ECG, echocardiography, 24-h Holter and exercise test) did not reveal abnormalities other than pulmonary emphysema in the father. Three of his children chose to have an ICD implanted for primary prevention of SCD. They all remained free of arrhythmias until now. However, at the age of 74, the father died from a non-cardiac cause.

A 33-year-old male was admitted to our hospital after his successful resuscitation. He collapsed after he had just gone to bed. Besides several unexplained syncopes in the months preceding the resuscitation, he had an unremarkable medical history, and complete cardiac examination (ECG, echocardiography, 24-h Holter and exercise test) revealed no abnormalities. An ICD was implanted, which appropriately discharged on several VF recurrences during the last years. Further history taking revealed that two previously considered healthy nephews of his great grandmother had died suddenly and unexpectedly, both at the age of 30 years, one while walking and the other while cycling.

Classical linkage analyses in familial IVF has previously been impossible due to the lack of a phenotype which indicates affected carriers, while those who are affected are only recognised because of a sudden cardiac arrest which most often results in death. This scenario often leaves too little clinical and genetic information to perform successful studies in a search for the culprit gene. However, genealogical analyses revealed that the three families mentioned above were in fact linked many generations before. As we now recognised that they probably belonged to one family, we were also able to start an identity-by-descent genome-wide haplotype-sharing analysis. The whole genome of eight family members was investigated by labelling over 300,000 common genetic variants (also known as single nucleotide polymorphisms or SNPs) with the use of Illumina HumanHap BeadChips. This enabled construction of shared segments (haplotypes) between the affected family members. As a result, one large haplotype of 301 contiguous SNPs was found on chromosome 7, which was highly significantly shared between affected family members of the three families (Fig. 2). This strongly suggested that the culprit gene for IVF in this family was located within this shared region. At this stage, the segment contained four genes: HTR5A (serotonin receptor in brain), PAX-IP1 (involved in DNA damage response), ACTR3B (expressed in tumorigenic cell lines) and DPP6 (associated with potassium channel subunits). Particularly, the last mentioned, DPP6, was interesting as it encodes for a putative subunit of the ion channel involved in the transient outward current (I _to) in heart [8]. However, direct sequencing of all the DPP6 coding exons in the affected family members did not reveal a mutation. Instead, a base pair substitution (C > T) was found just outside the coding region, upstream of one of the initiation codons. This variant was not documented in 350 controls but could not be directly marked as pathogenic.

To determine the relevance of DPP6 in familial IVF, we then screened 42 IVF probands considered unrelated to the three families of our initial studies for the same variant in DPP6. In seven families, we indeed identified the same C > T variant in DPP6. This indicates that they are in fact descendants from the same ancestors, which was confirmed by further extensive genealogical research for most families. Further analyses of the risk haplotype on chromosome 7 in these additional families allowed us to redefine the shared region between the affected family members. Subsequently, the haplotype became smaller and now excluded HTR5A, PAX-IP1 and ACTR3B. Thus, DPP6 was the only gene in the remaining shared region. Meanwhile, we identified another three probands harbouring this genetic defect, all of them from families with a high prevalence of SCD.

Although we did not document an exon mutation in DPP6, we know that regulation of gene expression might occur outside the coding region. Therefore, we set out to identify differences in DPP6 expression between affected family members and controls which could further establish a role for DPP6 in IVF. Heart biopsies were taken from five risk haplotype carriers and compared with biopsies from controls. Indeed, average mRNA expression levels of DPP6 were increased 22-fold in haplotype carriers as compared with controls, which indicates the overexpression of DPP6. Additionally, we excluded changed expression of the neighbouring genes PAX-1P and ACTR3B.

Currently, we already have clinical data of 255 family members of whom 117 carry the risk haplotype. As this is a founder ‘mutation’, the family members are unevenly distributed over the country with highest prevalence in the centre, around the cities of Woerden and Gouda (Fig. 3). Of course, because of migration, we also identified haplotype carriers in other parts of the country. This DPP6 founder mutation now almost reaches the size of another very large founder mutation, which is associated with cardiac arrests based on a mutation in the cardiac sodium channel gene SCN5A [9, 10].

Survival in affected family members is significantly decreased as can be appreciated from Fig. 4. At the age of 60 years, already 50% of the risk haplotype carriers have died or experienced a sudden cardiac arrest. As to the ventricular arrhythmias that affect this family, recordings show that these are elicited by very short coupled (right) ventricular extrasystoles (e.g. Fig. 5).

At this moment, we can only determine the risk of IVF in asymptomatic family members by carrier status of the risk haplotype on the DPP6 gene. Because this is such a malignant phenotype, and while we do not have pharmacological treatment to eradicate the risk of IVF, we now offer ICDs to risk haplotype carriers between approximately 20 and 50 years. These cutoffs were determined on pedigree analyses which did not show an increased risk for sudden unexplained cardiac arrest/death before and after these age boundaries as compared with the general Dutch population (standardised mortality ratio) [11]. Although this strategy should prevent sudden cardiac deaths due to termination of IVF by the ICD, we are well aware that we also introduce a large burden of (serious) ICD-related complications to these young persons [12]. In one of the severely symptomatic patients, quinidine has been effective in preventing VF recurrence. This closely follows previous favourable experiences of quinidine in IVF [13]. In another severely affected patient, the quinidine effect was only temporary, however. Also, the experience with ablation therapy in IVF is currently limited [14], but has led to temporary success in one of the patients.

The mechanism by which DPP6 overexpression would result in IVF without discernable ECG abnormalities is currently unknown. As mentioned, DPP6 is putatively involved in the transient outward potassium current I _to in heart [8]. This current is active in phase 1 of the cardiac action potential. While DPP6 mRNA seems to be similarly expressed between epicardium and endocardium, DPP6 overexpression does not necessarily have to alter the transmural I _to gradient. The latter may explain the absence of discernable ECG abnormalities.

A new arrhythmia gene on chromosome 7q36, DPP6, is linked to familial IVF and shows a very malignant phenotype. This phenotype consists of cardiac arrest by IVF at young age, which is elicited by short coupled extrasystoles. While this gene has not earlier been related to cardiac arrhythmias, we are now able, for the first time, to identify presymptomatic family members at risk for future fatal events solely by genetic analysis. Affected patients can be offered preventive treatment accordingly. Therefore, when there is a family history of unexplained sudden cardiac deaths, we make the reader aware of this particular link to the DPP6 gene as it may enable risk stratification of the remaining family members. In addition, when closely coupled extrasystoles initiate ventricular fibrillation in the absence of other identifiable causes, a link to the DPP6 gene should also be suspected.