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07-09-2022 | Brief Report

Brief Report: Risk Variants Could Inform Early Neurodevelopmental Outcome in Children with Developmental Disabilities

Auteurs: Taeyeop Lee, Hyeji Lee, Soowhee Kim, Kee Jeong Park, Joon-Yong An, Hyo-Won Kim

Gepubliceerd in: Journal of Autism and Developmental Disorders

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Abstract

The aim of this study was to examine genetic variations underlying the early neurodevelopmental outcome of developmental disabilities (DDs). The study cohort consisted of 191 children with DDs. Diagnosis was assessed at baseline and at the index age (72–84 months). Exome sequencing was conducted and putative risk variants were identified. According to the diagnostic improvement, children were categorized into the improvement group (n = 19) and the non-improvement group (n = 172). Compared to the non-improvement group, the improvement group had lower number of risk variants in known DD genes and haploinsufficient genes, and lower number of overall putative risk variants. Our results may serve as a preliminary basis for developing a model that informs clinical outcome by sequencing analysis.
Literatuur
go back to reference American Psychiatric Association. (2013). Diagnostic and statistical manual for mental disorder 5 (DSM-5). American Psychiatric Association. CrossRef American Psychiatric Association. (2013). Diagnostic and statistical manual for mental disorder 5 (DSM-5). American Psychiatric Association. CrossRef
go back to reference Chaste, P., Klei, L., Sanders, S. J., Murtha, M. T., Hus, V., Lowe, J. K., Willsey, A. J., Moreno-De-Luca, D., Yu, T. W., Fombonne, E., Geschwind, D., Grice, D. E., Ledbetter, D. H., Lord, C., Mane, S. M., Lese Martin, C., Martin, D. M., Morrow, E. M., Walsh, C. A., … Kim, S. J. (2013). Adjusting head circumference for covariates in autism: Clinical correlates of a highly heritable continuous trait. Biological Psychiatry, 74, 576–584. https://​doi.​org/​10.​1016/​j.​biopsych.​2013.​04.​018 CrossRefPubMedPubMedCentral Chaste, P., Klei, L., Sanders, S. J., Murtha, M. T., Hus, V., Lowe, J. K., Willsey, A. J., Moreno-De-Luca, D., Yu, T. W., Fombonne, E., Geschwind, D., Grice, D. E., Ledbetter, D. H., Lord, C., Mane, S. M., Lese Martin, C., Martin, D. M., Morrow, E. M., Walsh, C. A., … Kim, S. J. (2013). Adjusting head circumference for covariates in autism: Clinical correlates of a highly heritable continuous trait. Biological Psychiatry, 74, 576–584. https://​doi.​org/​10.​1016/​j.​biopsych.​2013.​04.​018 CrossRefPubMedPubMedCentral
go back to reference Chawarska, K., Shic, F., Macari, S., Campbell, D. J., Brian, J., Landa, R., Hutman, T., Nelson, C. A., Ozonoff, S., Tager-Flusberg, H., & Young, G. S. (2014). 18-month predictors of later outcomes in younger siblings of children with autism spectrum disorder: A baby siblings research consortium study. Journal of the American Academy of Child and Adolescent Psychiatry, 53, 1317–1327.e1. CrossRef Chawarska, K., Shic, F., Macari, S., Campbell, D. J., Brian, J., Landa, R., Hutman, T., Nelson, C. A., Ozonoff, S., Tager-Flusberg, H., & Young, G. S. (2014). 18-month predictors of later outcomes in younger siblings of children with autism spectrum disorder: A baby siblings research consortium study. Journal of the American Academy of Child and Adolescent Psychiatry, 53, 1317–1327.e1. CrossRef
go back to reference Iossifov, I., O’Roak, B. J., Sanders, S. J., Ronemus, M., Krumm, N., Levy, D., Stessman, H. A., Witherspoon, K. T., Vives, L., Patterson, K. E., Smith, J. D., Paeper, B., Nickerson, D. A., Dea, J., Dong, S., Gonzalez, L. E., Mandell, J. D., Mane, S. M., Murtha, M. T., … Wigler, M. (2014). The contribution of de novo coding mutations to autism spectrum disorder. Nature, 515, 216–221. https://​doi.​org/​10.​1038/​nature13908 CrossRefPubMedPubMedCentral Iossifov, I., O’Roak, B. J., Sanders, S. J., Ronemus, M., Krumm, N., Levy, D., Stessman, H. A., Witherspoon, K. T., Vives, L., Patterson, K. E., Smith, J. D., Paeper, B., Nickerson, D. A., Dea, J., Dong, S., Gonzalez, L. E., Mandell, J. D., Mane, S. M., Murtha, M. T., … Wigler, M. (2014). The contribution of de novo coding mutations to autism spectrum disorder. Nature, 515, 216–221. https://​doi.​org/​10.​1038/​nature13908 CrossRefPubMedPubMedCentral
go back to reference Kaplanis, J., Samocha, K. E., Wiel, L., Zhang, Z., Arvai, K. J., Eberhardt, R. Y., Gallone, G., Lelieveld, S. H., Martin, H. C., McRae, J. F., Short, P. J., Torene, R. I., de Boer, E., Danecek, P., Gardner, E. J., Huang, N., Lord, J., Martincorena, I., Pfundt, R., … Retterer, K. (2020). Evidence for 28 genetic disorders discovered by combining healthcare and research data. Nature, 586, 757–762. https://​doi.​org/​10.​1038/​s41586-020-2832-5 CrossRefPubMedPubMedCentral Kaplanis, J., Samocha, K. E., Wiel, L., Zhang, Z., Arvai, K. J., Eberhardt, R. Y., Gallone, G., Lelieveld, S. H., Martin, H. C., McRae, J. F., Short, P. J., Torene, R. I., de Boer, E., Danecek, P., Gardner, E. J., Huang, N., Lord, J., Martincorena, I., Pfundt, R., … Retterer, K. (2020). Evidence for 28 genetic disorders discovered by combining healthcare and research data. Nature, 586, 757–762. https://​doi.​org/​10.​1038/​s41586-020-2832-5 CrossRefPubMedPubMedCentral
go back to reference Lek, M., Karczewski, K. J., Minikel, E. V., Samocha, K. E., Banks, E., Fennell, T., O’Donnell-Luria, A. H., Ware, J. S., Hill, A. J., Cummings, B. B., Tukiainen, T., Birnbaum, D. P., Kosmicki, J. A., Duncan, L. E., Estrada, K., Zhao, F., Zou, J., Pierce-Hoffman, E., Berghout, J., … Exome Aggregation Consortium. (2016). Analysis of protein-coding genetic variation in 60,706 humans. Nature, 536, 285–291. https://​doi.​org/​10.​1038/​nature19057 CrossRefPubMedPubMedCentral Lek, M., Karczewski, K. J., Minikel, E. V., Samocha, K. E., Banks, E., Fennell, T., O’Donnell-Luria, A. H., Ware, J. S., Hill, A. J., Cummings, B. B., Tukiainen, T., Birnbaum, D. P., Kosmicki, J. A., Duncan, L. E., Estrada, K., Zhao, F., Zou, J., Pierce-Hoffman, E., Berghout, J., … Exome Aggregation Consortium. (2016). Analysis of protein-coding genetic variation in 60,706 humans. Nature, 536, 285–291. https://​doi.​org/​10.​1038/​nature19057 CrossRefPubMedPubMedCentral
go back to reference Martin, H. C., Jones, W. D., McIntyre, R., Sanchez-Andrade, G., Sanderson, M., Stephenson, J. D., Jones, C. P., Handsaker, J., Gallone, G., Bruntraeger, M., McRae, J. F., Prigmore, E., Short, P., Niemi, M., Kaplanis, J., Radford, E. J., Akawi, N., Balasubramanian, M., Dean, J., … Deciphering Developmental Disorders Study. (2018). Quantifying the contribution of recessive coding variation to developmental disorders. Science, 362, 1161–1164. https://​doi.​org/​10.​1126/​science.​aar6731 CrossRefPubMedPubMedCentral Martin, H. C., Jones, W. D., McIntyre, R., Sanchez-Andrade, G., Sanderson, M., Stephenson, J. D., Jones, C. P., Handsaker, J., Gallone, G., Bruntraeger, M., McRae, J. F., Prigmore, E., Short, P., Niemi, M., Kaplanis, J., Radford, E. J., Akawi, N., Balasubramanian, M., Dean, J., … Deciphering Developmental Disorders Study. (2018). Quantifying the contribution of recessive coding variation to developmental disorders. Science, 362, 1161–1164. https://​doi.​org/​10.​1126/​science.​aar6731 CrossRefPubMedPubMedCentral
go back to reference Sparrow, S., Cicchetti, D., & Balla, D. J. C. P. (2005). Vineland adaptive behavior scales-second edition (Vineland–II). American Guidance Service. Sparrow, S., Cicchetti, D., & Balla, D. J. C. P. (2005). Vineland adaptive behavior scales-second edition (Vineland–II). American Guidance Service.
go back to reference Stessman, H. A. F., Willemsen, M. H., Fenckova, M., Penn, O., Hoischen, A., Xiong, B., Wang, T., Hoekzema, K., Vives, L., Vogel, I., Brunner, H. G., van der Burgt, I., Ockeloen, C. W., Schuurs-Hoeijmakers, J. H., Klein Wassink-Ruiter, J. S., Stumpel, C., Stevens, S. J. C., Vles, H. S., Marcelis, C. M., … Kleefstra, T. (2016). Disruption of POGZ is associated with intellectual disability and autism spectrum disorders. American Journal of Human Genetics, 98, 541–552. https://​doi.​org/​10.​1016/​j.​ajhg.​2016.​02.​004 CrossRefPubMedPubMedCentral Stessman, H. A. F., Willemsen, M. H., Fenckova, M., Penn, O., Hoischen, A., Xiong, B., Wang, T., Hoekzema, K., Vives, L., Vogel, I., Brunner, H. G., van der Burgt, I., Ockeloen, C. W., Schuurs-Hoeijmakers, J. H., Klein Wassink-Ruiter, J. S., Stumpel, C., Stevens, S. J. C., Vles, H. S., Marcelis, C. M., … Kleefstra, T. (2016). Disruption of POGZ is associated with intellectual disability and autism spectrum disorders. American Journal of Human Genetics, 98, 541–552. https://​doi.​org/​10.​1016/​j.​ajhg.​2016.​02.​004 CrossRefPubMedPubMedCentral
go back to reference Szatmari, P., Georgiades, S., Duku, E., Bennett, T. A., Bryson, S., Fombonne, E., Mirenda, P., Roberts, W., Smith, I. M., Vaillancourt, T., Volden, J., Waddell, C., Zwaigenbaum, L., Elsabbagh, M., Thompson, A., Pathways in ASD Study Team. (2015). Developmental trajectories of symptom severity and adaptive functioning in an inception cohort of preschool children with autism spectrum disorder. JAMA Psychiatry, 72, 276–283. CrossRef Szatmari, P., Georgiades, S., Duku, E., Bennett, T. A., Bryson, S., Fombonne, E., Mirenda, P., Roberts, W., Smith, I. M., Vaillancourt, T., Volden, J., Waddell, C., Zwaigenbaum, L., Elsabbagh, M., Thompson, A., Pathways in ASD Study Team. (2015). Developmental trajectories of symptom severity and adaptive functioning in an inception cohort of preschool children with autism spectrum disorder. JAMA Psychiatry, 72, 276–283. CrossRef
go back to reference Van der Auwera, G. A., Carneiro, M. O., Hartl, C., Poplin, R., Del Angel, G., Levy-Moonshine, A., Jordan, T., Shakir, K., Roazen, D., Thibault, J., Banks, E., Garimella, K. V., Altshuler, D., Gabriel, S., & DePristo, M. A. (2013). From FastQ data to high confidence variant calls: The Genome Analysis Toolkit best practices pipeline. Current Protocols in Bioinformatics, 43, 11.10.1-11.10.33. https://​doi.​org/​10.​1002/​0471250953.​bi1110s43 CrossRef Van der Auwera, G. A., Carneiro, M. O., Hartl, C., Poplin, R., Del Angel, G., Levy-Moonshine, A., Jordan, T., Shakir, K., Roazen, D., Thibault, J., Banks, E., Garimella, K. V., Altshuler, D., Gabriel, S., & DePristo, M. A. (2013). From FastQ data to high confidence variant calls: The Genome Analysis Toolkit best practices pipeline. Current Protocols in Bioinformatics, 43, 11.10.1-11.10.33. https://​doi.​org/​10.​1002/​0471250953.​bi1110s43 CrossRef
go back to reference Wechsler, D. J. T. P. C. S. A. (2012). Wechsler preschool and primary scale of intelligence—fourth edition. The Psychological Corporation San Antonio. Wechsler, D. J. T. P. C. S. A. (2012). Wechsler preschool and primary scale of intelligence—fourth edition. The Psychological Corporation San Antonio.
Metagegevens
Titel
Brief Report: Risk Variants Could Inform Early Neurodevelopmental Outcome in Children with Developmental Disabilities
Auteurs
Taeyeop Lee
Hyeji Lee
Soowhee Kim
Kee Jeong Park
Joon-Yong An
Hyo-Won Kim
Publicatiedatum
07-09-2022
Uitgeverij
Springer US
Gepubliceerd in
Journal of Autism and Developmental Disorders
Print ISSN: 0162-3257
Elektronisch ISSN: 1573-3432
DOI
https://doi.org/10.1007/s10803-022-05735-4